PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G048000.1
Common NameB456_013G048000, LOC105784341
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 249aa    MW: 26519.5 Da    PI: 6.7755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G048000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000131411801054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + R ++i ++++ L++l+ +      +K + a++L +A+ YI+ L
  Gorai.013G048000.1 141 KVRKEKIGDRINALQQLVSPF-----GKTDTASVLHEAMGYIRFL 180
                         568899*************98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-5122185No hitNo description
PROSITE profilePS5088810.791131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-11140194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-8141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MMAETEADHG FEGDQETATT TTTSSSFSQL LFGGGHDDDG DTLGPAQSFN YTCSSFAVKS  60
TPKMLCFGGC HPNDADIVLG KPAINAAPKA GLTCSDSSST SSGNNTKSMQ CRGAIVEAQP  120
TRRRTNKRSK VENPTTGGHA KVRKEKIGDR INALQQLVSP FGKTDTASVL HEAMGYIRFL  180
HDQVQVLCSP YLQHPHDGEN NGGEESRKEL KSRGLCLVPV ACTAHVENSN GADFWSPATM  240
GNNVIIRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128RRTNKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465652.10.0PREDICTED: transcription factor bHLH113-like isoform X1
SwissprotQ9LT677e-55BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A0D2VAP90.0A0A0D2VAP9_G
STRINGVIT_03s0091g00210.t012e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.18e-53bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]